PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00912.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 87aa    MW: 9755.83 Da    PI: 8.2887
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00912.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.6e-322377360
              ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                             +vrY eC+kNhAas+Gg++vDGC+E+mp+   ++t+ +l+CaACgCHRnFHRreve+e
  Sme2.5_00912.1_g00003.1 23 RVRYVECQKNHAASVGGYVVDGCREYMPE---DTTSGTLNCAACGCHRNFHRREVETE 77
                             79**************************8...66789*****************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-211987IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.4E-272474IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-252574IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.1832673IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MKKVLRRNDS SRNCTNSSFT VRRVRYVECQ KNHAASVGGY VVDGCREYMP EDTTSGTLNC  60
AACGCHRNFH RREVETEVAS DCTSTTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225442e-81AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBankAC2265072e-81AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBankAM2616282e-81AM261628.1 Solanum lycopersicum mRNA for mini zinc finger protein (ima gene).
GenBankEU1612832e-81EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBankHG9754412e-81HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-81HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234189.17e-52mini zinc finger protein
SwissprotQ9LJW53e-29MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0ZXL18e-52A0ZXL1_SOLLC; Mini zinc finger protein
STRINGSolyc02g087970.1.12e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-30mini zinc finger 2